Overall
Plot
Individual metrics
Overall
Batch correction
Batch correction
PCR batch
Batch ASW
Graph iLISI
Graph connectivity
kBET
Bio conservation
Bio conservation
NMI cluster/label
ARI cluster/label
Label ASW
Isolated label F1
Isolated label silhouette
Graph cLISI
HVG conservation
Cell cycle conservation
Trajectory conservation
UMAPs
Full
Scaled
MNN - Features
Batch
Labels
Scanorama - Embedding
Batch
Labels
Scanorama - Features
Batch
Labels
Seurat v3 - Features
Batch
Labels
Harmony - Embedding
Batch
Labels
BBKNN - Graph
Batch
Labels
ComBat - Features
Batch
Labels
FastMNN - Embedding
Batch
Labels
FastMNN - Features
Batch
Labels
Unscaled
MNN - Features
Batch
Labels
Scanorama - Embedding
Batch
Labels
Scanorama - Features
Batch
Labels
Seurat v3 - Features
Batch
Labels
Harmony - Embedding
Batch
Labels
BBKNN - Graph
Batch
Labels
scVI - Embedding
Batch
Labels
ComBat - Features
Batch
Labels
LIGER - Embedding
Batch
Labels
scANVI - Embedding
Batch
Labels
FastMNN - Embedding
Batch
Labels
FastMNN - Features
Batch
Labels
Unintegrated - Features
Batch
Labels
HVG
Scaled
MNN - Features
Batch
Labels
Scanorama - Embedding
Batch
Labels
Scanorama - Features
Batch
Labels
Seurat v3 - Features
Batch
Labels
Harmony - Embedding
Batch
Labels
BBKNN - Graph
Batch
Labels
ComBat - Features
Batch
Labels
FastMNN - Embedding
Batch
Labels
FastMNN - Features
Batch
Labels
Unscaled
MNN - Features
Batch
Labels
Scanorama - Embedding
Batch
Labels
Scanorama - Features
Batch
Labels
Seurat v3 - Features
Batch
Labels
Harmony - Embedding
Batch
Labels
BBKNN - Graph
Batch
Labels
scVI - Embedding
Batch
Labels
ComBat - Features
Batch
Labels
LIGER - Embedding
Batch
Labels
scANVI - Embedding
Batch
Labels
FastMNN - Embedding
Batch
Labels
FastMNN - Features
Batch
Labels
